CDS

Accession Number TCMCG057C40336
gbkey CDS
Protein Id XP_018445855.1
Location complement(join(9378161..9378357,9378441..9379282,9379361..9379603,9379680..9379774,9379849..9380274,9380411..9380623,9380718..9380783,9380864..9380921,9380999..9381111,9381220..9381391,9381478..9381722,9381794..9381874,9381963..9382103,9382192..9382284,9382372..9382422,9382522..9382605,9382702..9383028,9383127..9383195))
Gene LOC108817619
GeneID 108817619
Organism Raphanus sativus

Protein

Length 1171aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018590353.1
Definition PREDICTED: tetratricopeptide repeat protein SKI3 isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Tetratricopeptide repeat
KEGG_TC -
KEGG_Module M00392        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K12600        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03018        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0000184        [VIEW IN EMBL-EBI]
GO:0000288        [VIEW IN EMBL-EBI]
GO:0000291        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034427        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035327        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043928        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0055087        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070478        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAATTGGAGCAGCTTGAGAAGTCCGTGGAAGCGAACCCAAACGATCCTTCACTTCAATTCCAACTTGGTTTGTATCTGTGGGACAACGGTGGAGACAACTCGGAGAAAGCGGCGGAGCATTTTGTGCTGTCGGCGAAGTTGAACCCGGACAATGCTGCTGCGTTCAAGTACTTGGGGCATTATTACTCTCGTGTGACGCTTGATCGCAACCGAGCTGCTAAGTGTTACCAGAGAGCAGTGTTGCTGAACCCTAATGATTCTGAGTCTGGAGAGGCTTTGTGTGATTTGTTGGATGGACAAGGGAAAGAGATCTTGGAAGCTGCGGTTTGCCGTGACGCTTCTGAGAAGTCTCCCAAGGCTTTCTGGGCGTTTTGCAGATTGGGTTACATTCAGCTTCATCAGAAGAAGTGGTCTGAAGCTGTTCAGAGCCTTCAACATGCTATTAGAGGTTATCCTACAGTGTCTGACTTGTGGGAAGCTCTGGGCCTTGCTTACCAGCGACTTGGAATGTTTACTGCTGCTATCAAGGCGTATGGCCGTGCCATTGAATTAGATGAGACCAAGATTTTTGCATTAGTGGAGAGTGCAAACATCTTTTTGATGCTTGGTTCATATAGAAAGGGTGTGGAGCTCTTTGAGCAAGCGCTGAAGATTTCACCTCAGAATATTTCTGTGCTCTATGGTCTTGCTTCTGGATTGCTTAGTTGGTCAAAGGAATGCATAGATTTGGGCGCATTTGGATGGGCTGCTTCTTTGTTGGAGGATGCTCGTAAAGCTGCGGAAGCAAGCACTGAACTGGCCAGCAACATGTCTTCTATATGGAAATTGCATGGAGATATTCAGCTTACTTATGCTAGATGCTTTCCATGGTCTGGTGGAACTGAGAACTCAGAATTCACTTTAAAGACATTTAATGATTCAATCCTTTCTTGGAGAAGCATTTGTTACTCAGCTGCATTCTCAGCCAAATCTTCTTACCAGCGAGCTCTACATTTAGCCCCCTGGCAAGCCAATCTTTATACTGACATCGCCATATCTTCTGATCTCGTTTCAAGTTTAAGCGATGACTCTGAGACTTCTAATTCTTGGAAGCTACCAGAAAAGATGGCTCTGGGAGCGTTATTTCTGGAATGCGACAACTCGGAGTTCTGGGTTGCTTTGGGTTGTATGTCTGATAACAGTGCTTTGAAACTACATGCTTTGATCCGGGCGCTGCATTTGGATGTATCTTTAGCCGTTGCATGGGCTTTTATGGGCCAGATCTTCAGGGAATCAGATGAAATGAAATTGGCAAAGCAGGCTTTTGATTGTGCTAGAAGCATAGATCCTACACTTGCGCTACCTTGGGCTGGCTCAGCTGATACTTATGCTAGGGAGTCAACATCAGATGAGGCTTTTGAAAGTTGTTTACGAGCTGCTCAGATATCACCTCTTGCGGAGTACCAAGTTGGTTTGGCATGGCTTGCTCTGCTGCAGGGAAATATATCGTCTCCGCAGATTTTCGCTTGCATTGAGCAGGCGGTGCAGCGCACCCCTGATTACCCTGAATCCCATAACCTCCACGGGCTAGTCTGCGAGGCAAGACATAACTATCATACTGCCATTGCTTCATACAGGCTAGCACTGGCTGCAATGAGTGTTTGCCCTGACAATTCAGTGAAATCTCATGCTGGAAAAATATCTATTAACTTGGTCAGATCACTCAGCAAGGCAGGACGATTCAAAGAATCTGTCAAGGAATGCGCAAATTTGAAGTCAAAAGGTTTGCTTGATGCTGGAGGCTTGCAAATCTATGCCTTCTCTCTGTGGAAGATCGGTGAGAATGATTCGGCTCTCTCAGTGGTTCGGGAGCTGGCTGGTAGCATTTCCACCATGGAAAAAACATCAATACCTTTCCCAATCAGCTTCATCTGTAGTCTGCTTTATTGCATATCTGGACCGGATTCTGCTATCACCAGCATCCAGAAAATGCCAAAGGACTTCTTCCAGAGTTCGAAAATCAGCTTCATAGTATCTGCCATCCATTCTCTTGACCAGAGCGATAGGCTCCAGTCGATTGTTGCAAGCACTCGTAGCTATATCACATCACAGGAAGAAATAGTTGCTATGCACTATTTGATAGCACTCAGCAAACTGCTGAAAACTGGAGCAGGAGAGTTCCTTGGATTTGAGAAGGGGATTGCACACCTCAGAAAAGCTCTGCATATGTATCCTCATAGTAATTTGTTGAGGAACCTGCTCGGATATATTTTGTTAGCTGGTGAAGGAACGAAAGAGGTGTGTGCTGCTAGTAGATGCTGTATCATAAACGTCTCCGAGTGTGGAAACAAGGAAGGTCTGAAGTCTGCGTTGGAGGTCCTTGGTGGAGGATCGGTTGCTTGCAATGTGATTGGCAATACAGCTCCAAGGTTCTCTTTTCCAACATGCCACTGTCAGAGTCTGAATGCTCCTGTTCTTGTTGTGGAACTACAGAGGTTCTTGCATCAAGAACCTTGGAACAGCGATGTGAGATACTTGCTTATTCTGAATCTCATGCAGAAGGCCCGTGAACAGAGATTCCCTAGACAACTTTGCAGTGCTATTGAGAGTTTAATCTCCGTGGCACTCTCTGATGAGGCGTGTTCAAAGGAAGGCGAATATCAAAAGTTCCAGCTTCTGCTTTGCGCTTCTGAGATCAGTTTGCAGAAGGGGAATGTAGCAGAGTCCATTGACCATGCTCGAAAGGCTTCTTCCCTTTCCCTTCCAAGTAGCTACCTGTTTCTTGCACATTTGCAGCTTTGCCGTGCCTATGCAGCAACAGGGAGCACCAGAAACATGCAAGAGGAATACAGAGCGTGTTTGGAGCTCAAGACCGACTCAAATATTGGTTTGATCTGCCTGAAGCTCATAGAATCTCAGTTTGATCTGGAGGCTGACACTAACCTCTTAGAGATGATGAGCCTACAAGAGAGTCCAAGCCAGGAGAAGAGTTCATGGAAAGAGTGGATGGCTGTATACAGTCTAGCTCTTGGCTTAGTTTCTTCCGGGAGAAAAGACTTTTCCTCAGCGGAGGAGTTTCTTGCGCAAGCTTGTTCGTTGGGTAACTCAGAGAGCTGTCTACTTCTCTGCCATGGTGCTGTCTGCGTGGAGCTGGCTAGACAGTCTAATGACTCGCATTTCCTCTCACTAGCTGTAACGAGTCTAAGCAAAGTTCAAGCGAGTTCCCTGACTCCTTTGCCTATTGTGTATGCTTTATTGGCTCAAGCACATGGAAGTCTTGGCTCTAAAGAGAAATGGAAGAAGAATCTTCGCCTTGAATGGTTCTGCTGGCCACCAGAGATGAGACCTGCAGAGGTTTACTTCCAGATGCATATACTTGCAAGAGAATCAGAAGACAGACTCGAAGCCGCTTCAGGGATTGAAAACTGTCAAACCCCTGAGAAATGGGTGCTTAGGGCGATTCACACTAACCCTTCTTGTATGAGATATTGGAACGTCTTGGATAAGCTTGATCAACAACTTCCCATTAGCTAA
Protein:  
MELEQLEKSVEANPNDPSLQFQLGLYLWDNGGDNSEKAAEHFVLSAKLNPDNAAAFKYLGHYYSRVTLDRNRAAKCYQRAVLLNPNDSESGEALCDLLDGQGKEILEAAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTVSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKECIDLGAFGWAASLLEDARKAAEASTELASNMSSIWKLHGDIQLTYARCFPWSGGTENSEFTLKTFNDSILSWRSICYSAAFSAKSSYQRALHLAPWQANLYTDIAISSDLVSSLSDDSETSNSWKLPEKMALGALFLECDNSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQIFRESDEMKLAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAEYQVGLAWLALLQGNISSPQIFACIEQAVQRTPDYPESHNLHGLVCEARHNYHTAIASYRLALAAMSVCPDNSVKSHAGKISINLVRSLSKAGRFKESVKECANLKSKGLLDAGGLQIYAFSLWKIGENDSALSVVRELAGSISTMEKTSIPFPISFICSLLYCISGPDSAITSIQKMPKDFFQSSKISFIVSAIHSLDQSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKTGAGEFLGFEKGIAHLRKALHMYPHSNLLRNLLGYILLAGEGTKEVCAASRCCIINVSECGNKEGLKSALEVLGGGSVACNVIGNTAPRFSFPTCHCQSLNAPVLVVELQRFLHQEPWNSDVRYLLILNLMQKAREQRFPRQLCSAIESLISVALSDEACSKEGEYQKFQLLLCASEISLQKGNVAESIDHARKASSLSLPSSYLFLAHLQLCRAYAATGSTRNMQEEYRACLELKTDSNIGLICLKLIESQFDLEADTNLLEMMSLQESPSQEKSSWKEWMAVYSLALGLVSSGRKDFSSAEEFLAQACSLGNSESCLLLCHGAVCVELARQSNDSHFLSLAVTSLSKVQASSLTPLPIVYALLAQAHGSLGSKEKWKKNLRLEWFCWPPEMRPAEVYFQMHILARESEDRLEAASGIENCQTPEKWVLRAIHTNPSCMRYWNVLDKLDQQLPIS